PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.chr_20_#_21
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family NF-YA
Protein Properties Length: 271aa    MW: 27899.5 Da    PI: 11.1958
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.chr_20_#_21genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA56.87.4e-18112173258
                CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekk.....ldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                              +++YVNaKQy++Il+RR++Rak +++        ++ +r    + SR+ hA++R Rg++G++
  fgenesh1_pg.chr_20_#_21 112 AAVYVNAKQYNAILRRRKARAKEAAKAVgrltvREASGRGVAKYASRSAHAKKRVRGKDGKY 173
                              789*******************99844355654346789999******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-10109176IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115219.806110176IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.4E-13113173IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MVVSDALTST SAGGVHPMAF VYAANHHHHH HHRDGEGGAR NHHPATRRRM CEEDEGALAS  60
VVGVGGVVDP SAYERVTSGN PFGGELLATP AGATANARAR AHSRVLLPTT DAAVYVNAKQ  120
YNAILRRRKA RAKEAAKAVG RLTVREASGR GVAKYASRSA HAKKRVRGKD GKYLTRAELL  180
AGLGGPEAKA RAEAREVEIA ERAAKKKARE EKRERKAREK AALRASKVAA AAAAAAASAS  240
ASASAAPAPA PAPAPAPAPA PAPTTTTVAV *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161167AKKRVRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1330122